Comments (3)
Hi,
It appears that you have only one sample in your maf file. Can you add more dummy Tumor Sample Barcodes and see if it works ?
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That's what I did. Is the library not supposed to work when you have only 1 sample?!
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Yes. With only one sample many functions fail to run, because MAF is assumed to be from a cohort rather than a single sample.
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Related Issues (20)
- Plot is being masked by a white layer HOT 4
- extra space somaticInteractions HOT 3
- Error in sub(re, "", x, perl = TRUE) : input string 78 is invalid UTF-8 in subsetMaf HOT 9
- Lollipop plots HOT 5
- is it possible to create a gisticChromPlot using mouse data? HOT 2
- clinicalEnrichment Error: Object 'Analysis' not found amongst [] HOT 7
- Incomplete population of labels in coGisticChromPlot; overlapping of labels that do populate HOT 2
- survGroup minSample option HOT 2
- when adding cntable to maf tools object, if no mutations in gene the Start_Position End_Position are blank leading to errors HOT 5
- Extracting VAF information apart from plot. HOT 4
- Running trinucleotideMatrix generates Error in.Call2 HOT 11
- Getting error in lollipop plot HOT 3
- Signature plot HOT 11
- TMB plot (tcgaCompare): Burden changes depending on input order HOT 2
- Different aa.lengths in lollipopPlot() and lollipopPlot2() HOT 2
- lollipopPlot()Report an error:Error in .getdomains(geneID = gene, refSeqID = refSeqID, proteinID = proteinID) : Structure for protein PPDPFL not found. HOT 1
- The get_col_df function seems to have a bug in the 6th line HOT 2
- Error in if (dist <= mergeDist) { : missing value where TRUE/FALSE needed HOT 1
- sampleSwaps.R: add an error message in case of missing index files HOT 6
- Lollipopplot does not show complete protein length. HOT 4
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