During pytest place_seqs.py fails and cannot run the full pipeline about picrust2

[R-Wright-1]

Hi there, could you see if the fix in issue #314 works?

[rassanjorjo]

Good day!

I tried to run as outlined in issue #314 but another error popped out after pip install --editable .

(picrust2-src) rey@H110M-DESK:~/picrust2-2.5.2$ pip install --editable .
/home/rey/miniconda3/envs/picrust2-src/bin/pip: line 3: import: command not found
/home/rey/miniconda3/envs/picrust2-src/bin/pip: line 4: import: command not found
from: can't read /var/mail/pip._internal.cli.main
/home/rey/miniconda3/envs/picrust2-src/bin/pip: line 9: syntax error near unexpected token (' /home/rey/miniconda3/envs/picrust2-src/bin/pip: line 9: sys.argv[0] = re.sub(r'(-script.pyw?|.exe)?$', '', sys.argv[0])'

and i cannot run pytest successfully.

Thank you so much

[R-Wright-1]

Can you give some details about what system you're using, etc?

[rassanjorjo]

Im using ubuntu on windows, RAM is at 12GB but an i3-6100 processor using a 64bit operating system

[R-Wright-1]

Hmm, I think that the RAM might be the issue. You can see in the installation instructions that at least 16GB is needed - I think that trying the version within QIIME2 is your best bet.

[R-Wright-1]

I'm just closing this as there has been no further response.