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accumulator

Cryptographic accumulators in Rust.

ace

Admission to Candidacy Exam

assaytools

Modeling and Bayesian analysis of fluorescence and absorbance assays.

bayesian-forcefields

General Framework for Bayesian Parameterization of Force Fields

bayesian-itc

Python tools for the analysis and modeling of isothermal titration calorimetry (ITC) experiments.

boondock

Docker daemon API in Rust

bqff

Bayesian quadrature and optimization with forcefields

cellfree-expression

Tools for cell-free expression of proteins

conda-dev-recipes

Conda development recipes (*-dev packages), built nightly by travis cron

deepchem

Deep-learning models for Drug Discovery and Quantum Chemistry

density-measurements

Density measurements made with the Chodera lab Mettler-Toledo DM40 and SC30 sample changer

docker-py

A Python library for the Docker Engine API

edward

A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.

ensembler-manuscripts

Manuscript for Ensembler v1

ensembler2

examol

Strategies for sampling over chemical space

firstwebsite

first coding experience

gaff2xml

gbff

Tools for Bayesian forcefield development

gbff-attic

Generalized Bayesian forcefield development.

gpu-ci

Basic experimentation with using ECS w/GPUs for CI

incubator-spark

Mirror of Apache Spark

jsnark

A Java library for writing circuits/constraint systems for zk-SNARKs.

lab-protocols

A collection of protocols, primarily for automated protein expression and mutagenesis

lambci

A continuous integration system built on AWS Lambda

mcmc-expectations

Tools for calculating expectations in a consistent way from MCMC samples

msmseeder

open-forcefield-group

For discussing and aggregating data for force field development

openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

openmm-constph

OpenMM testbed for constant-pH methodologies.