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Patrick Cudahy's Projects

advrkoans icon advrkoans

advRkoans is an interactive tutorial for learning advanced R programming by making tests pass

ggdag icon ggdag

:arrow_lower_left: :arrow_lower_right: An R package for working with causal directed acyclic graphs (DAGs)

krakentools icon krakentools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

linuxbrew-core icon linuxbrew-core

🍻🐧 Core formulae for the Homebrew package manager on Linux

lmpthw icon lmpthw

Learn more python 3 the hard way exercises

mlrpt-runner icon mlrpt-runner

Schedule mlrpt captures of meteor-2 data on a raspberry pi using systemd

r-conda icon r-conda

R and RStudio via conda packages in repo2docker

sos icon sos

SoS workflow system for daily data analysis

vcfprocess icon vcfprocess

Variant Call Format to CSV and FASTA with filtering of SNPs and INDELs and identification of mixed infection

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