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cabalzar_fields_etal_2019_molecol

cnd

clone of source files from CNDm and CNDd for Unix

col-cen

Resources for the Col-CEN reference genome assemblies

cs-nf-pipelines

The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines

cymira

The Cytonuclear Molecular Interactions Reference for Arabidopsis

daphnia_metacommunity

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

deepmod2

DeepMod that works on Guppy or Tombo generated FAST5 files

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

degenotate

diploshic

driftsel

Modified version of the R package "driftsel"

drosophila-genome-nexus

The Drosophila Genome Nexus is a repository of more than 600 Drosophila melanogaster genomes from Africa, Europe, and North America. All scripts and pipeline commands used to generate these genome sequences are available here.

ethoscope

a platform from monitoring animal behaviour in real time from a raspberry pi

fields_etal_2015_molecol

fields_etal_2015_molecolres

fields_etal_2022_mbe

fields_morgan_linkc

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

gatk-docs

Documentation archive for GATK tools and workflows

grant_proposals

graph_peak_caller

ChIP-seq peak caller for reads mapped to a graph-based reference genome

grenedalf

Toolkit for Analyzing Allele Frequencies of Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

homotools

isoseq_explorations

isoseq_rarefaction

lagrange

A minimalist Jekyll theme for running a personal blog

latex-nihbiosketch

A LaTeX class implementing the new NIH Biographical Sketch Format

locator

deep learning prediction of geographic location from individual genome sequences

multidfe

Inference of the Distribution of Fitness effects of new mutations with Maximum Likelihood