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Name: Base\Per
Type: User
Company: NEC OncoImmunity
Bio: Bioinformatician@NEC OncoImmunity
Location: Oslo, Norway
Name: Base\Per
Type: User
Company: NEC OncoImmunity
Bio: Bioinformatician@NEC OncoImmunity
Location: Oslo, Norway
Simulate cross-sample-contamination by mixing fastq reads from two samples
Add custom sequence/gene to cellranger reference
Singularity container build recipes for ngs analyses
ctg cronjobs
Nextflow pipeline for exome analysis
nextflow pipeline to run panels in tumor-only (somatic) mode
qc app flask
Cron-script for automatic delivery of ctg-rawdata projects
nextflow pipeline for 10x-sc-ARC (multiome RNA+ATAC) analysis
nextflow pipeline for cellranger atac 10x analysis and qc
Cellranger Multiplex pipeline
nextflow pipeline for 10x cite-seq (rna+adt)
demux (mkfastq) + qc of 10x data
10x GEX and cmo and/or adt
10x VDJ+ADT+GEX pipeline based on cellranger
Demux + QC of NGS Illumina run
10x visium pipeline
Whole Genome Sequencing analysis with Dragen server
Dotfiles for linux
scripts and files related to Grassi et al Heliyon 2019/2020
test circleci
humanVSchimp RNAseq, Proteomics, ChIPseq, scRNAseq
Fusion genes identification pipeline
ngs pipelines _ nextflow/singularity workflows
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