Comments (5)
That's quite odd. It's also a bit suspicious that it finds exactly the same number of positives in the first 2 splits. Any chance you can share the input file?
What is feature 13, could you plot a histogram of that feature?
from percolator.
from percolator.
Dear Seungjin,
The problem is that the ScanNr
column only contains zeros. Therefore, percolator puts them all in the same cross validation bin, meaning that the other two cross validation bins are empty.
-Matthew
from percolator.
from percolator.
Yes, that would work.
Just note that we also use the scannr for retaining only one PSM per scan, so if you want to use that behavior, one should provide the same scannr to PSMs from the same scan.
from percolator.
Related Issues (20)
- Error Specific to HPC - Couldn't find protein header HOT 3
- TDC issue when rescoring multiple files
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- Extremely slow GitHub Action MacOS builds HOT 1
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- Question: Folder of pin files as input HOT 3
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- Any idea about the error: `percolator: /storage/yufe/tools/percolator-rel-3-06-04/src/BaseSpline.cpp:234: void BaseSpline::initiateQR(): Assertion `dx[ix] > 0' failed.`?
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