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abc_tutorial

abcsmc

Sequential Monte Carlo Approximate Bayesian Computation with Partial Least Squares parameter estimator

abcsmcdemos

Demos to Accompany https://github.com/tjhladish/AbcSmc

adv-r

Advanced R: a book

agg

Linux command line utility for aggregating numerical data

alice

atom-make-runner

Make runner for the Atom editor.

awesome-public-datasets

A topic-centric list of HQ open datasets.

beamer-stub

Provides a template for beamer presentations

bio-pipeline

Sample Version Control Repository for Software Carpentry Boot Camps

bob

bpmodels

Methods for analysing the sizes and lengths of chains from branching process models

cabputils

carl

cfr_calculation

cmdstanr

CmdStanR: the R interface to CmdStan

cmmid.github.io

coffee

covid-import-model

Modelling variant importations

covidtestvac

SI + code for direct benefit model of COVID test & vaccinate scheme

cv

cycle-analysis

detection approaches for analyzing synthetic populations embedded in large backgrounds

data-analysis-assn-1

Data Analysis Course Assignment 1

datatablelesson

a data.table tutorial

dengue

dengue_vc_analysis

ecomodelmarkdowns

Stand alone markdowns with embedded shiny apps for various eco&epi models

epidemics4-talk

abstract (now - later entire talk + source) for Epidemics4 conference

epinow2

Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

epinowcast

Flexible hierarchical nowcasting