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Lab website

Build with gatsby-starter-delog. You can run the website from the root of this repository as follows:

npm install
gatsby develop # see localhost:8000

Structure

Information is located in website folder.

  • _data
    • blog contains a list of markdown for blog posts
    • people contains a list of people in the lab
    • resources contains a list of resources at the lab
    • publications.yml is a YAML file for publications
    • resources.yml is a YAML file for tools and resources produced from the lab
  • src/pages contains all the pages
  • site-meta-data.json contains basic information for the site and landing page

Contact Page

We use EmailJS for sending email in contact page. In this repository, we have a set of key-value pairs as an example in .env.example. To test functionality of the contact page, you will need an EmailJS account (a free one is fine) and setup three keys in .env file:

  • Email services -- to link your email via SMTP
  • Email templates -- to structure the email message
  • Integration -- to get User ID

Then put these keys in .env file before running development.

Parallel Computing and Data Science Lab (Saeed Lab)'s Projects

gicops icon gicops

HiCOPS: Computational framework for peptide identification from MS data through accelerated database search

gpu-arraysort-2.0 icon gpu-arraysort-2.0

This version of GPU-ArraySort is capable of sorting large number of variable sized arrays, also includes some big fixes.

gpu-daemon icon gpu-daemon

GPU-DAEMON: GPU Algorithm Design, Data Management and Optimization techniques for array based big omics data

gpu-pcc icon gpu-pcc

This repository contains the source code of GPU-PCC algorithm

gpu-sfft icon gpu-sfft

The implementation of the GPU-SFFT algorithm

graph-dom icon graph-dom

Graph-DOM is a tool to analyze comprehensive fragmentation data for dissolved organic matter (DOM) using graph algorithms.

lbdslim icon lbdslim

Load Balancing Algorithm for Distributed SLM-Transform (DSLIM)

mlspred-bench icon mlspred-bench

MLSPred-Bench: Reference EEG Benchmark for Prediction of Epileptic Seizures

mspconverter icon mspconverter

A package to convert tandem mass spectra files from MSP to MGF format

phyngsc icon phyngsc

A hybrid strategy between MPI and OpenMP to accelerate the compression of big FASTQ datasets

slmindex icon slmindex

SLM-Transform: Fast and Memory-Efficient MS/MS Spectra Indexing for Peptide Search in Mass-Spectrometry based Proteomics

slmindexbeta icon slmindexbeta

The implementation of SLM-Index v0.7beta integrated into Comet-MS v2016.03 codebase

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