Comments (15)
Please provide the full code and data set you're using. There's little I can do with just this info
-Paul
from heartrate_analysis_python.
from heartrate_analysis_python.
from heartrate_analysis_python.
Can you share the .py file? I cannot see the images. Don't know what set the 'same dataset' is
from heartrate_analysis_python.
from heartrate_analysis_python.
from heartrate_analysis_python.
Thanks, will have a look over the weekend.
-Paul
from heartrate_analysis_python.
from heartrate_analysis_python.
Ah you're using that example smartwatch dataset. Be aware that the data is very intermittent (some sections contain data, some do not), see the whole plot here:
You would need to write some code to exclude sections where no signal is present, and only run the analysis on sections where there's a signal present (the exception you're getting is telling you there's no signal). There's an example of how you might approach this task at the end of that same notebook, but by no means is that the only approach possible.
Alternative is collecting some of your own data using a smartwatch or ppg sensor.
Cheers,
Paul
from heartrate_analysis_python.
from heartrate_analysis_python.
Good luck, let me know if you need further assistance. Closing this for now.
Cheers,
Paul
from heartrate_analysis_python.
from heartrate_analysis_python.
It looks like you're still running the whole signal through heartpy, while large parts contain nothing. The exception is telling you what's going on: there's no (detectable) heart rate signal in the first portion passed to it.
You still need to expand the example code from the notebook a bit to also exclude the parts with no signal, right now it's only setting it to 0.
Alternatively you step over all exceptions and keep running the loop, those sections with sufficient heart rate signal present will then still return results.
Yet alternatively you can find plenty of free ppg datasets online.
Good luck!
Paul
from heartrate_analysis_python.
from heartrate_analysis_python.
As I mentioned, you need to handle the exception somehow for the cases where no heart rate signal is present in the example data. If you pass a signal segment without heart rate signal in it heartpy will complain, and that's what the exception is telling you in detail.
You can use a try except loop for handling exceptions, see the Python docs here for more info
Cheers,
Paul
from heartrate_analysis_python.
Related Issues (20)
- versioning doesn't match
- AttributeError: module 'HeartPy' has no attribute 'calc_fd_measures' HOT 1
- Why cutoff=0.05Hz in remove_baseline_wander()? HOT 2
- Peak detection fails for high DC levels HOT 2
- Input raw PPG data clarification in example 3
- Using plotter in Anaconda's JupyterLab gives non-GUI backend UserWarning
- questions abouts calc_fd_measures
- Identify abnormally elevated T waves as R waves HOT 1
- Calling hp.plotter(wd, m) in Jupyter Notebook gives UserWarning HOT 1
- return param 'best' in working_data is what?
- hampel_filter filtsize doesn't work as expected/intended.
- What "s" stand for? HOT 2
- customize frequency bands for frequency-based analysis? HOT 2
- PPG input file (array) what information or data ? HOT 3
- heart rate from six leads ecg
- issue with reject_segmentwise argument inside "hp.process" function
- TypeError: 'numpy.float64' object cannot be interpreted as an integer
- Docs Error in heartrateanalysis.rst HOT 1
- hp.plotter crashes HOT 3
- Process_segmentwise ignore_badsignalwarning=True causes an array size mismatch HOT 1
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