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Paul Thompson's Projects

cameraviewer icon cameraviewer

QT viewer for viewing and saving from an arbitrary number of Basler Cameras

deepslice icon deepslice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

intan-rhx icon intan-rhx

Intan RHX is free, powerful data acquisition software that displays and records electrophysiological signals from any Intan RHD or RHS system using an RHD USB interface board, RHD recording controller, or RHS stim/recording controller

jneuron icon jneuron

Simple single neuron simulations in Julia

keras-unet-collection icon keras-unet-collection

The Tensorflow, Keras implementation of U-net, V-net, U-net++, UNET 3+, Attention U-net, R2U-net, ResUnet-a, U^2-Net, TransUNET, and Swin-UNET with optional ImageNet-trained backbones.

kilosort icon kilosort

Fast spike sorting with drift correction for up to a thousand channels

moose icon moose

Multiphysics Object Oriented Simulation Environment

nginx-jupyterhub icon nginx-jupyterhub

Creates nginx proxy to /user/username needed for spawning arbitrary containers with jupyter hub

phy icon phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

phylib icon phylib

Lightweight electrophysiological data analysis library

plugin-gui icon plugin-gui

Software for processing, recording, and visualizing multichannel electrophysiology data

pystripe icon pystripe

An image processing package for removing streaks from SPIM images

rhythm icon rhythm

Intan Technologies Rhythm Verilog HDL code

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