Comments (4)
Hi Alessandra, gget alphafold probably is not accessing your computer's GPUs, and since it runs locally, the runtime is highly dependent on the speed of your internet connection. (If you run gget alphafold on Google Colab (example ) you should find more similar runtimes.)
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Hm maybe some system monitor, e.g. watch -n 1 nvidia-smi
(also see: https://unix.stackexchange.com/questions/38560/gpu-usage-monitoring-cuda). I expect that gget alphafold is not recognizing your GPU (and I am not sure how to fix that), but please let me know what you find
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Re the slower runtime: https://twitter.com/neuroluebbert/status/1555968176348729344?s=46&t=1ZZOf9kQsZAlnUIYgUDEoQ
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Related Issues (20)
- Rewrite gget BLAST to use BLAST+ instead of deprecated NCBI server
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- gget.cellxgene TileDBError error when trying to return anndata HOT 4
- Add module to COSMIC database
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- Speeding up gget.info by making pdb search mutable HOT 5
- Option to reduce verbosity or turn off logging HOT 4
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- gget blast sequence needs to be capitalized for automatic recognition of nucleotide/amino acid seq HOT 1
- Request addition of Eukaryotic Linear Motif database HOT 1
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