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Alphafold running time about gget HOT 4 CLOSED

pachterlab avatar pachterlab commented on May 21, 2024
Alphafold running time

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Comments (4)

lauraluebbert avatar lauraluebbert commented on May 21, 2024

Hi Alessandra, gget alphafold probably is not accessing your computer's GPUs, and since it runs locally, the runtime is highly dependent on the speed of your internet connection. (If you run gget alphafold on Google Colab (example ) you should find more similar runtimes.)

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almart7 avatar almart7 commented on May 21, 2024

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lauraluebbert avatar lauraluebbert commented on May 21, 2024

Hm maybe some system monitor, e.g. watch -n 1 nvidia-smi (also see: https://unix.stackexchange.com/questions/38560/gpu-usage-monitoring-cuda). I expect that gget alphafold is not recognizing your GPU (and I am not sure how to fix that), but please let me know what you find

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lauraluebbert avatar lauraluebbert commented on May 21, 2024

Re the slower runtime: https://twitter.com/neuroluebbert/status/1555968176348729344?s=46&t=1ZZOf9kQsZAlnUIYgUDEoQ

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