oxb-dc Goto Github PK

addtextlabels

An R package for a function that adds non-overlapping text labels to a plot

arriba

Fast and accurate gene fusion detection from RNA-Seq data

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

bamtools

C++ API & command-line toolkit for working with BAM data

bamutil

basicplotter

A collection of tools to help with plotting with R

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bedops

:microscope: BEDOPS: high-performance genomic feature operations

bedtools2

bedtools - the swiss army knife for genome arithmetic

binb

Binb is not Beamer

chimpipe

ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

clust

Automatic and optimised consensus clustering of one or more heterogeneous datasets

course_rna-seq2019

deeptools

Tools to process and analyze deep sequencing data.

deerect-polya

A Deep Learning model for PAS recognition

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fastq_utils

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

fastqc

A quality control analysis tool for high throughput sequencing data

fastqvalidator

Validate FastQ Files

fqtools

An efficient FASTQ manipulation suite

gatk

Official code repository for GATK versions 4 and up

gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

ggfortify

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.

ggpubr

'ggplot2' Based Publication Ready Plots

ggsashimi

Command-line tool for the visualization of splicing events across multiple samples

githubinstall

A Helpful Way to Install R Packages Hosted on GitHub

hisat2

Graph-based alignment (Hierarchical Graph FM index)

how_are_we_stranded_here

Check strandedness of RNA-Seq fastq files

htslib

C library for high-throughput sequencing data formats