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Onur Serçinoğlu's Projects

arpeggio icon arpeggio

Calculation of interatomic interactions in molecular structures

bsb511 icon bsb511

This repository is intended to store course material for BSB511 - Bioinformatics Fundamentals, a graduate-level course taught at GTU Bioinformatics and Systems Biology Graduate Program.

costbio.github.io icon costbio.github.io

The home of Computational Structural Biology Research Group led by Dr. Onur Serçinoğlu at GTU Bioengineering Department

courses icon courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

data-science-ipython-notebooks icon data-science-ipython-notebooks

Continually updated Data Science Python Notebooks: Spark, Hadoop MapReduce, HDFS, AWS, Kaggle, scikit-learn, matplotlib, pandas, NumPy, SciPy, and various command lines.

encom icon encom

Coarse-grained Normal Mode Analysis software

frustratometer2 icon frustratometer2

This repository contains the pipeline for running the frustratometer software

imgthla icon imgthla

Github for files currently published in the IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

mdtraj icon mdtraj

A modern, open library for the analysis of molecular dynamics trajectories

mlclass icon mlclass

Python code for Machine Learning course from Coursera

pdb-tools icon pdb-tools

Set of utility scripts to manipulate PDB files

pdb2fasta icon pdb2fasta

Take a PDB file and spit out protein sequence in 3 or 1 letter format

pdbtools icon pdbtools

A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

pdbtools-1 icon pdbtools-1

Tool(s) for cleaning, munging and analysing PDB files for structural bioinformatics analysis.

pysca icon pysca

A python implementation of the Statistical Coupling Analysis (SCA)

sbm-openmm icon sbm-openmm

Python library to run structure based model (SBM) simulations using the OpenMM toolkit

timeout icon timeout

A script to measure and limit CPU time and memory consumption of black-box processes in Linux

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