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adult

The project focused on using Machine Learning (glm function on data Adult) in R. The goal of it was to develop a model that predicts a person's income (under 50k per year or over 50k per year).

analiza_danych_projekt

Finding mutations in genomic data with the use of the chi2 test and Parallel functions in Python and R

bachelor_thesis

The performance of individual CNV detection software and state-of-the-art sequencing. All analyses were performed using the Python and R programming languages.

chip-seq

This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.

data_visualisation

Here I commit my projects of data cleaning and (mostly) visualization in tools such as Excel, Power BI, and Tableau.

evolutionary_genetics

Investigating HIV subtype evolution through maximum-likelihood and GTR model analysis, focusing on clade formation and genetic diversity. Utilizing BEAST for HIV-1 sequence analysis to estimate evolutionary rates and MRCA, highlighting subtype diversification.

genetics_of_population

Study of microsatellite sequences in the Red fox population

genomics_project

Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees

github-slideshow

A robot powered training repository :robot:

lims_database

Project of Medical Database with the possibility of logging for users and adding new data to base

master_thesis

Analysis of SNPs that have the greatest impact of appearance of mammary gland tumour in dogs.

methods_of_genetic_evaluation_of_animals

The project focused on the analysis of foxes from 3 different farms and the subsequent presentation of trait heritability results, genetic trends, breeding values and relationship matrix.

monte_carlo

Estimation of the Shapiro-Wilk test using the Monte Carlo method.

orangepomeranian

Config files for my GitHub profile.

pca

PCA analysis of GUS data

pipeline_with_snakemake

Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.

podstawy_statystycznego_modelowania_danych

Codes from Course The basics of Statistical Data Modelling

population_genetics

Analyzing genetic variation and selection in three-spined stickleback populations, these projects apply statistical and evolutionary genomic analyses to understand environmental influences and identify outlier SNPs, highlighting the interplay between natural selection and population differentiation.

programy_komputerowe

Translation of the FASTA file with genetic code into aminoacid code.

python

quantitative_genetics

This project leverages PLINK for GWAS Quality Control, focusing on SNP analysis and PCA for ancestry insights, showcasing the vital role of bioinformatics in enhancing population genetics research.

spatial_analysis

This project conducts spatial analysis on lung cancer tissue using Scanpy and data from 10x Genomics, focusing on preprocessing, quality control, and functional analysis of spatially variable genes. Insights into the molecular heterogeneity of lung cancer are uncovered, highlighting regions of interest for further research.

suncharge_visualisation

Suncharge company supply chain data visualisation.

survival_analysis

This project focuces on analysis of survival patients with Aids, with Python library Lifelines

tf_cnn

The aim of this project was to create a classification model for patients with suspected brain tumour development based on MRI images with Keras and TensorFlow.