optogeneticsandneuralengineeringcore
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Name: Optogenetics and Neural Engineering Core
Type: User
Company: University of Colorado Denver
Bio: Optogenetics and Neural Engineering (ONE) Core at the University of Colorado Denver, School of Medicine. bit.ly/onecore
Twitter: ONECoreLab1
Blog: optogenetics.ucdenver.edu
Optogenetics and Neural Engineering Core's Projects
Design and Control your experiments with a TTL Generator and Controller
Adaptation of deeplabcut for video acquisition and analysis using the BioElectrics Lab CLARA (closed-loop automated reaching apparatus)
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
SDK for running DeepLabCut on a live video stream
GUI to run DeepLabCut on live video feed
A fast, microcontroller-based dynamic clamp system
Expansion of the "A Dynamic Clamp on Every Rig" by Niraj S. Desai
An inexpensive, simple, and robust tissue clearing chamber for use with CLARITY.
Hardware and software to capture discrete pixel intensity transitions from an LCD screen
:books: Freely available programming books
GCP VM Images
Documentation for the Open Ephys GUI
This is the public repository for LabVIEW code to use the LabJack LJM library.
An Arduino based controller to safely create tissue lesions across electrodes
Sharing some designs for the Amazing MiniScope project
We have moved all new git use to gitlab. You can poke around here, poke around there, but the real site it over at bit.ly/onecore
Hardware, firmware, and host APIs for serialized, high channel count, closed-loop electrophysiology :rat:
Raspberry Pi Camera Web Interface with Microscope
Setting up Ubuntu on the Razer Blade 15 (2021)
Flask application to control a thermal camera. Built for a UC Denver neuroscience outreach event
Inexpensive 3D printed parts to easily attach to basic stereotaxic equipment. Several designs are shared and can hold MiniScope microscopes, fiber optic cannulas, neural electric array probes, *or both optics and electrodes*. Also can secure wires and fibers out of the way.
An open-source circuit for microwire tetrode gold plating
Multithreaded video capture with OpenCV and Python