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Welcome to Benjamin's GitHub Page! 👋

My name is Dr Benjamin Blundell and I'm a Research Software Engineer at the Sea Mammal Research Unit (SMRU) 🦭 at the Scottish Oceans Institute, 🐋 at the University of St Andrews 🐳

Previously, I was a PhD Student at King's College London 🎓 within the London Interdisciplinary Doctoral (LIDo) Bioscience Programme.

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I'm a software engineer and scientist working in AI, computer vision and the biosciences

I'm a computer scientist by education, a Research Software Engineer by profession and theres a bit of bioscience in there too by. I started my PhD training with the London Interdisciplinary Doctoral (LIDo) Programme, with King's College London. I was formally part of the ch'ng group at the IoPPN, and the Cox group in Randall Centre for Cell & Molecular Biophysics.

I'm now based at the Sea Mammal Research Unit, over at the University of St Andrews, spending my time looking at Sonar Images with A.I. and computer vision.

You can find our latest paper "3D Structure from 2D Microscopy images using Deep Learning" in the Frontiers in Bioinformatics Journal

Benjamin Blundell's Projects

3dm icon 3dm

Official code for "3DM: Deep decomposition and deconvolution microscopy for rapid neural activity imaging", Optics Express.

crabseal icon crabseal

Generate datasets from the sealhits data, ready for the OceanMotion Neural Network.

cybar icon cybar

Cybar websites, graphics, fonts and styles.

glf icon glf

A Rust Library to read the GLF files produced by the Tritech Sonar.

hdmi_pmod icon hdmi_pmod

A HDMI Compatible PMOD for the ArtyA7 (and probably others) FPGA Dev Board

holly icon holly

HOLLy - A neural network project to determine 3D structure from 2D SMLM images.

libcee icon libcee

A small library of useful C and C++ functions

mres icon mres

The public face of my MRes Project

nope icon nope

Neuron Orientation & Pose Estimation

powerglove icon powerglove

A project to convert your Powerglove into a USB Joystick

pxljs icon pxljs

A WebGL Library written to take the gruntwork out of 3D graphics, but still giving you freedom.

pypam icon pypam

A small library that reads PGDF files.

pytritech icon pytritech

A python interface to the Tritech GLF files.

r2ks icon r2ks

The R2KS statistic for similarity in gene expression

sealhits icon sealhits

The main set of scripts on the SMRU project.

speccy icon speccy

An introduction to programming the ZX Spectrum

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