oncology Goto Github PK

-breast-cancer-ml

Diagnosing Malignant versus Benign Breast Tumours via Machine Learning Techniques in High Dimensions

bc_risk_predictor

Breast Cancer Risk Prediction Algorithms

biocmultiassay

breast-cancer-grade-analysis

breast_cancer_networks

Breast cancer studies

cancer-classification

A program that uses the k nearest neighbor algorithm and training data to predict whether cancer is malignant or benign

cancer-kbs_

Cancer Knowledge based system is used for diagnosis of various types of cancers and getting information on supported types of cancers. It currently supports 10 types of common cancers suspected to be among the major types.

cancer-mirna-regulatory-network

A database containing the predictions for the Cancer miRNA-Regulatory Network.

cg

CG - cancer genomics pipeline

colorectalcancerprediction

Colorectal Cancer Prediction, Using Gene Expression Data

doppelgangr

Identify possibly duplicate samples in a list of ExpressionSets

ebcall

an empirical Bayesian framework for mutation detection from cancer genome sequencing data

gdc_data_analysis

Tools to analysis GDC data

gdsctools

Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )

gidget

TCGA Feature Matrix Pipeline

immunophenogram

kcluster

Machine Learning Toolkit for Multi-omics Cancer Subtype Discovery using Multiple Kernel Learning

mel

Tools to help identify new and changing moles on the skin with the goal of early detection of melanoma skin cancer.

micro

A tool for rapid discovery of interesting miRNA/protein interactions.

msisensor

microsatellite instability detection using paired tumor-normal

multiscale-mutation-hotspots

Multiscale Mutation Hotspots

music2

identifying mutational significance in cancer genomes

pancreatic-carcinoma-classifier

Pancreatic cancer classifier using DNA Methylation information. This project was done as part of our Foundations of Machine Learning course.

pathway-interaction-database

The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and cellular processes assembled into signaling pathways.

rtcga.methylation

Methylation datasets from The Cancer Genome Atlas Project

rtcga.rnaseq

RNASeq datasets from The Cancer Genome Atlas Project

sequence_recurrence

Identification of known and novel recurrent viral sequences in data from multiple patients and multiple cancers

tcga-age-emdomics

Project using EMDomics to track demographic expression patterns based on age in cancer patients

tcga_datascience

timer

Deconvolve individual immune cell types from cancer data