oliver-lorenz-dev Goto Github PK

address_book

Code from my MSc computing foundations of data science module

archive_to_s3

biopython

Biopython code I wrote in early-mid 2020

check_disruptive_mutations

Python script which checks DNA sequences for disruptive mutations

cps_extractor

wip

cps_reference_database

cram_to_fastq_nf

quick nextflow pipeline for custom cram to fastq conversion

csc8332-bio-datascience

Code from my MSc Bioinformatics CSC8332 module (machine learning)

dna-sequence-analysis-app

Code from my MSc Bioinformatics CSC8330 module

fasta_tools

small toolkit which can help manipulate fasta files, playing around with some new python libraries.

genome-scale-data-analytics

Contains DESeq2 RNA-Seq data analysis code

ijms-pca-publication-2021

msc-dissertation-code

nanoseq

Nanopore demultiplexing, QC and alignment pipeline

oliver-lorenz-dev

Config files for my GitHub profile.

perl-playground

messing around with perl

pipelines

Pipelines for processing malaria parasite and mosquito genome sequence data.

pneumokity_nextflow

Nextflow wrapper for running pneumokity on sanger HPC

python-card-games

Python scripts I wrote in 2019/early 2020.

random

rna-seq-workflow-2021

seroba

Bugfix Fork of the Original SeroBA

useful-scripts

useful scripts I've written at work