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bio3d

A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d

bio3d.ggplot

R package of utility functions for ggplotting bio3d matrix data

biopython

Official git repository for Biopython (originally converted from CVS)

coot

Software for macromolecular model-building

dimple

Coyote-Maestas Final Version

dimple_manuscript_figures

dms_analysis_stub

A stub for analysis and plotting of DMS experiments with R

dumpling

A Snakemake-based pipeline for analyzing DMS data, as used with Rosace

fahrcode

fahrcode is a snakemake pipeline for associating barcodes with genetic variants using long-read sequencing

fraser-lab.github.io

Fraser Lab website

gatk

Official code repository for GATK versions 4 and up

gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

ggmsa

:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2

ggprot

Protein plotting for ggplot2

gpr68_dms_qc

QC data for GPR68 DMS

gpr68_processing

Processing pipeline for GPR68 DMS data

jopiy-papers

jopiy-reviews

libcifpp

Library containing code to manipulate mmCIF and PDB files

libraryanalysis2

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_dumpling

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

oct1_dms

Analysis of OCT1 DMS data.

od_standards_calibration_plugin

An plugin for Pioreactors that allows OD calibration from a set of standards.

odcambc.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

phyx

phylogenetics tools for linux (and other mostly posix compliant) computers

pioreactor

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

pioreactor-logs2slack

pioreactor-relay-plugin

Relay plugin for the Pioreactor.