oceangenomics Goto Github PK

arriba

Fast and accurate gene fusion detection from RNA-Seq data

autoparadvisor

diploidsquid

Diploid-SQUID detects transcriptomic structural variations in heterogeneous contexts.

goofys

a high-performance, POSIX-ish Amazon S3 file system written in Go

gota

Gota: DataFrames and data wrangling in Go (Golang)

hts

biogo high throughput sequencing repository

mantis

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

mudskipper

A tool for projecting genomic alignments to transcriptomic coordinates

pufferfish

An efficient index for the colored, compacted, de Bruijn graph

rent

Feature selection method based on repeated elastic net.

rnaseqtools

toolkit to process gtf files

sad

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

scallop

Scallop is a reference-based transcriptome assembler for RNA-seq

squid

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

txomeai

R wrapper for the txome.ai RNA-Seq analysis API