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enmtools

ENMTools R Package

esmvaltool

ESMValTool: A community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP

eukrep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets

eukulele

Automatic eukaryotic taxonomic classification

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fastscape

A fast, versatile and user-friendly landscape evolution model

generalr

gibbonsecr

SECR analysis for acoustic gibbon surveys

gllvm

Generalized Linear Latent Variable Models

gm_lc_v3

Land Cover (GLCNMO) - Global version - Version 3

heatmaps

Heatmap demo for U of T Coders

hello-world

hpru_metagenomics

Import and process results from a metagenomics output e.g. metaphlan2

inext

R package for interpolation and extrapolation

irsae2021gllvmworkshop

GLLVM Workshop material for IRSAE 2021

isb_course_2021

Materials and presentations for the 2021 ISB Virtual Microbiome Series.

isb_course_2023

Materials and presentation for the 2023 ISB Microbiome course.

jcu.microgvl.ansible.playbook

krona

Interactively explore metagenomes and more from a web browser.

lefse

liu2020proteincell

Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome

make_silva_db

General procedure for making QIIME 2 compatible SILVA reference files

mammalianguts

maxent

Maximum entropy modelling of species geographic distributions.

megan-ce

MEGAN Community Edition

metagenomeseq

Statistical analysis for sparse high-throughput sequencing

mice8992-2016

Code used in MiCE 8992 Spring 2016

microbiome

microbiome R package

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

microbiomehd

Cross-disease comparison of case-control gut microbiome studies