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Nadezda Volkova's Projects

btm-2015 icon btm-2015

Material for Basic Teaching Module (2015)

btm-2016 icon btm-2016

Materials for Basic Teaching Module in Predoc Course 2016

deepsnv icon deepsnv

The official repository for the deepSNV bioconductor packages. Master is the active development branch. The devel branch is synchronised with the devel branch on the bioconductor svn and contains x.y.z versioned snapshots.

mmr icon mmr

C. elegans and ICGC cancer data analysis for Meier, Volkova et al. 2017 (http://www.biorxiv.org/content/biorxiv/early/2017/06/13/149153.full.pdf).

mutationaccumulation icon mutationaccumulation

Codes for a publication about mutation accumulation in >60 DNA repair deficient C. elegant lines (Meier et al, under preparation).

mutsim icon mutsim

R package for generating substitutions in genes

pc-chip icon pc-chip

Pan-cancer quantitative histopathology analysis using deep learning

phd icon phd

phd projects at EBI

radiation icon radiation

Codes for the analysis of C. elegant samples of different DNA repair deficient backgrounds exposed to ionising radiation.

rcourse icon rcourse

Materials for my R programming course

rosalind icon rosalind

python solutions to Rosalind challenges

signature-interactions icon signature-interactions

Codes and data for the manuscript "Mutational signatures are jointly shaped by DNA damage and repair"

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