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Neil Anthony, PhD; Data Scientist, Microscopist, Life Science Technologist

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Technologies

Type Skills
Programming Languages Python Java R C C++
Data Science & Machine Learning TensorFlow PyTorch Keras SciKit Learn SciPy Pandas NumPy
Data Visualization Seaborn Matplotlib Power Bi
Cloud AWS Azure
Databases PostgreSQL SQLite
ORMs & ODMs SQLAlchemy
Design Adobe Photoshop Adobe Illustrator Inkscape Gimp Gnu Image Manipulation Program Blender
Other Tools Visual Studio Code Spyder Slack Git Prezi Jira Trello Confluence

N Anthony's Projects

arrows icon arrows

ImageJ / Fiji java code for easily controllable overlay directional arrows

bunwarpj icon bunwarpj

ImageJ/Fiji plugin for consistent elastic registration of 2D images

cmdstanpy icon cmdstanpy

CmdStanPy is a lightweight interface to Stan for Python users which provides the necessary objects and functions to compile a Stan program and fit the model to data using CmdStan.

fcs-time-symmetric-analysis icon fcs-time-symmetric-analysis

Contains original Igor Pro code from Ishii & Tahara, Optics Express 2015, of the beautifully elegant time symmetric correlation function that removes after pulsing, together with my Matlab port.

gitignore icon gitignore

A collection of useful .gitignore templates

ilastik icon ilastik

ilastik-shell, applets, and workflows to string them together.

nanostringnctools icon nanostringnctools

Tools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.

nuc_ctdna_process icon nuc_ctdna_process

ImageJ 1.x macros and Matlab code for processing 3D nuclear classification and quantification

open-abberior-files icon open-abberior-files

ImageJ plugin to open Abberior obf and msr files, providing a neater, more collated, channel handling.

spim-create-xml-dataset icon spim-create-xml-dataset

Fiji / ImageJ Plugin for generating BigDataViewer / BigStitcher .xml dataset files that contain rotated and translated stack metadata for easy fusing.

spim-matlab-destripe-deshake icon spim-matlab-destripe-deshake

Matlab app to destripe, using Pierre Weiss VSNR, and deshake, using Guizar-Sicairos, Thurman, and Fienup Efficient subpixel image registration algorithms

tiff_process icon tiff_process

basic input, process, output of tiff files using arrayfire to do the hardwork

tttr icon tttr

Upgraded code options for Pico Quant Time Tagged Time Resolved (TTTR) data. Main focus will be on .ptu files.

visum icon visum

Laser scanning microscope control GUI. Controls NI hardware cards for image acquisitions including timelapse, zstacks, stitching and saves to a custom bolstered tif format.

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