npbhavya Goto Github PK
Name: Bhavya Papudeshi
Type: User
Company: Flinders University
Twitter: BhavyaPapudeshi
Bhavya Papudeshi's Projects
atavide
Atavistic processing of metagenomics data.
atavide_lite
A simpler version of atavide that relies only on slurm or PBS scripts. Some of the settings maybe specific for our compute resources
bacterial-genome-assembly
Scripts and code used for genome assembly of bacterial sequences
bioconda-recipes
Conda recipes for the bioconda channel.
bovgenomes-analysis
This repository holds the scripts used to analyse symbiont, X. bovienii genomes
fameous-metagenomic-workflow
short read annotation for taxonomic and gene functions
flindersfame.github.io
The FAME Website
hybracter
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
kraken2-output-manipulation
Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each column is number of reads that were rooted to this taxon (column 2 in summary)
metagenome-assembled-genomes-workflow
Workflow to build metagenome assembled genomes (MAG) from shotgun sequenced metagenomes.
phicore
work in progress. but got to do with phage genomes because they are awesome!
prophagepredictioncomparisons
Comparisons of multiple different prophage predictions
scripts
Take output from multiple samples and adds them to one table at the end
sphae
NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
sphaehost
bacterial assembly and annotation
workshop2022
FAME Metagenomics workshop 2022
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