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Chiara Rasi's Projects

cgbeacon icon cgbeacon

Instructions and files to set up an Elixir-based beacon connected to a MySQL database.

cgbeacon_ui icon cgbeacon_ui

Flask app handling variant queries to the Clinical Genomics Beacon

cgmatch icon cgmatch

An interface to a custom Matchmaker Exchange node at Clinical Genomics.

cgmatch-1 icon cgmatch-1

Add patient data to a matchmaker exchange node and shows patient matching with test queries

deliver icon deliver

Scripts for automating data delivery and report generation of sequencing results

easyauth icon easyauth

Create a centralized Authentication and Authorization token server. Easily secure FastAPI endpoints based on Users, Groups, Roles or Permissions with very little database usage.

exomiser icon exomiser

A Tool to Annotate and Prioritize Exome Variants

flask-ldapconn icon flask-ldapconn

Flask extension providing python-ldap3 connection and ORM for accessing LDAP servers.

genotype icon genotype

Simple genotype comparison of VCF files

grafana icon grafana

The tool for beautiful monitoring and metric analytics & dashboards for Graphite, InfluxDB & Prometheus & More

howtos icon howtos

Contains stuff that I've learnt and I don't want to forget

jwt-auth-proxy icon jwt-auth-proxy

A lightweight JWT authentication proxy written in Go designed for use in Docker/Kubernetes environments.

matchbox icon matchbox

matchbox server for the Matchmaker Exchange

mme-apis icon mme-apis

Documentation for the MatchmakerExchange APIs

mosdepth icon mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

mutacc icon mutacc

Mutation accumulation in a genomic background of reference samples

pdfmerger icon pdfmerger

A small python package to merge and bookmark PDF files based on PyPDF2

perl_scripts icon perl_scripts

A collection of perl scripts. Mostly used for parsing array-cgh data

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