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.github

Files for the @nf-core GitHub organisation

16s-rdna-dada2-pipeline

dada2 Nextflow pipeline

2016-summer-workshop

ISCB DC Area Regional Student Group - Summer 2016 Workshop

2020_global_nematode_dataset

Global Nematode Dataset

2022-12-08-shotgun-metagenomics-workshop

Data Carpentry workshop organised at Utrecht University Medical Center on December 8-9, 2022.

2023_01_23_laikipia_uni_online

awesome-github-profile-readme-templates

This repository contains best profile readme's for your reference.

bda_course_aalto

Bayesian Data Analysis course at Aalto

bda_r_demos

Bayesian Data Analysis demos for R

bhki-training-activities

BHKi Seminar Series

bi-be-cs-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

bioinformatics-coffee-hour

Short lessons from FAS Informatics coffee hour

bsci411-co-expression-networks

Lecture of co-expression networks for UMD BSCI411 Fall 2016 course.

bsf-gut-meta-transcriptomics

Gut Metatranscriptomics of the Black Soldier Fly larvae

co-expressionnetwork

Scripts and documentation of co-expression network analysis

copenhagen

Analysis of genotyping and next-generation sequencing data in medical and population genetics

corset

Software for clustering de novo assembled transcripts and counting overlapping reads

counttofpkm

Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)

cwltool

Common Workflow Language reference implementation

deeplearning.ai_improving_deep_neural_networks

Hyper-Parameters Tuning, Regularization and Optimization of Deep Neural Networks...

dna-seq-analysis

DNA sequencing analysis notes from Ming Tang

dwgcna

Differential Weighted Gene Coexpression Network Analysis

effect_adnadamage_denovoassembly

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

eukaprot_in_publicsoilmetag

evalgcninmaize

evaluation on Gene Co-expression Network in maize

evoclustrna

RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io

finalproject

gemmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

geneset-preservation-analysis

This directory contains code that enables geneset preservation analyses between two experimental conditions (e.g. cases vs. healthy controls).