Name: Noam Teyssier
Type: User
Company: UCSF
Bio: Bioinformatics at the intersection of systems biology, machine learning, and functional genomics in neurodegenerative disease
Location: Oakland, California
Blog: noamteyssier.github.io
I'm Noam Teyssier, a Bioinformatics PhD Candidate in the Kampmann Lab and Goodarzi Lab at UCSF.
I work at the intersection of functional genomics, machine learning, dynamical modeling, and systems biology in the context of neurodegenerative diseases.
I highly value open source and try to share all the tools I've developed during my own research.
10x_nextflow
a nextflow pipeline for 10X sequencing
10x_rna_velocity_nextflow
A nextflow pipeline for running RNA velocity splice aware mapping on 10x fastqs
10x_whitelist_mirror
A mirror of the 10X whitelists
adjustp
A crate to handle various p-value adjustments
adjustpy
a simple utility python module to calculate adjusted p-values
adpbulk
pseudobulking on an AnnData object
alpha-rra
an implementation of Ξ±RRA for aggregating grouped p-values
ama1
collection of scripts related to PFAMA1
art_or_trash
is it art? or is it trash?
bedrs
bedtools-like functionality for interval sets in rust
binftools
bootstrap_analysis_invivo_crispr_screen
an analysis for estimating the stability of hits and how many mice are required to recover those hits
casgen
Generates cas12 6-plex reads
casmap
Mapping sgRNA counts for cas12 6-mer CRISPR screens
clap
A full featured, fast Command Line Argument Parser for Rust
clusterdock
Pipeline and analysis scripts for k-mean based clustering of DOCK
coitrees
A very fast interval tree data structure
convg
a tool to convert directed and undirected graphs from NAUTY and Traces into adjacency, dot, and net files.
crispr_screen
Efficient Differential Expression and Gene Aggregation for CRISPR screens.
cshift
A tool to perform cluster enrichment/depletion analyses
czi_ndcn_2023
This is a linktree for my presentation on CRISPRBrain at the CZI NDCN 2023 Conference
czi_ndcn_webinar_session1
The results of the workshop and example data from CZI NDCN Webinar Session 1
disambiseq
Create unambiguous one-off mismatch libraries for DNA sequences
faiquery
perform interval queries on an indexed fasta file
fixedbitset
A simple bitset container for Rust
fxread
a fastx reader
fxread_benchmark
simple benchmark for usage for fxread, fastq, and bio-rs
fxtools
a collection of CLI utilities for processing fasta/fastq (FASTX) files.
geomux
hypergeometric testing of guide RNA identity to assign cell barcodes to a guide identity
geopagg
geometric p-value aggregation for gene-groups
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
π Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. πππ
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google β€οΈ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
