Coder Social home page Coder Social logo

Comments (2)

matthew-brett avatar matthew-brett commented on June 14, 2024

Are you sure that you can change the file using the current nibabel? The default mmap mode is 'c' - so - as I understand it - the OS will make a new memory copy when the array is changed, and will not change the file on disk.

In [1]: import nibabel as nib
In [4]: import numpy as np
In [5]: img = nib.Nifti1Image(np.zeros((2,3,4)), np.eye(4))
In [6]: nib.save(img, 'test.nii')
In [7]: img2 = nib.load('test.nii')
In [9]: data = img2.get_data()
In [10]: type(data)
Out[10]: numpy.core.memmap.memmap
In [11]: data[0] = 99
In [13]: del(img2)
In [14]: del(data)
In [15]: img3 = nib.load('test.nii')
In [16]: img3.get_data()
Out[16]: 
memmap([[[ 0.,  0.,  0.,  0.],
        [ 0.,  0.,  0.,  0.],
        [ 0.,  0.,  0.,  0.]],

       [[ 0.,  0.,  0.,  0.],
        [ 0.,  0.,  0.,  0.],
        [ 0.,  0.,  0.,  0.]]])

from nibabel.

chrisgorgo avatar chrisgorgo commented on June 14, 2024

My bad - I must have misunderstood the discussion going on the mailing list. I did not realise that nibabel always opens files with mode='c' instead of using the default value (which is 'r+'). It is all good then.

from nibabel.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.