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Name: Nils Giordano
Type: User
Bio: Research Scientist (Integrated Cancer Genomics)
Location: Nantes, France
Name: Nils Giordano
Type: User
Bio: Research Scientist (Integrated Cancer Genomics)
Location: Nantes, France
Advanced R: a book
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Jupyter notebook for the Environmental Genomics session at the Angers Bioinfo Summer School 2018
CarveMe: genome-scale metabolic model reconstruction
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Light-weight system monitor for X.
Personal Curriculum Vitae
Fast genome-wide functional annotation through orthology assignment
Sources of an extended abstract written for the MTNS2014 conference
My IPython extensions
Python package to study microbial communities using metabolic modeling.
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
MountyZilla, une extension Firefox pour le jeu MountyHall
git repo of the odes scikit for scipy
The Markdown Resume
Themes for pelican
The tex and requirement files for a TP on Flux Balance Analysis using Cobrapy given at the École Normale Supérieure (Imalis graduate program) on October, 21th 2014.
Presto performs a fast Wilcoxon rank sum test and auROC analysis. Latest benchmark ran 1 million observations, 1K features, and 10 groups in 16 seconds (sparse input) and 85 seconds (dense input).
Prodigal Gene Prediction Software
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
Quick analysis of the allocation of the French "réserve parlementaire" in 2015
Sensitivity Analysis Library in Python (Numpy). Contains Sobol, Morris, Fractional Factorial and FAST methods.
R toolkit for single cell genomics
Data and charts related to the recent french bioinformatics job market.
This is the development home of the workflow management system Snakemake. For general information, see
This is the sources of my PhD thesis titled: "Microbial growth control in changing environments"
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Source files used to generate my personal website using Pelican
Python package for fluorescent reporter data analysis
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.