nicokiaru Goto Github PK

abapi-jclient

Java client for the Allen Bain RESTful API

abba-python

How to use Aligning Big Brains and Atlases with Python

abba-qupath-utility-scripts

A collection of scripts for ABBA, Fiji and QuPath.

bacteriaworkflow

Bacteria segmentation and quantification with FIJI and ilastik

bdvslicer

[Obsolete] Big Data Viewer Slicer. Commands to extract a user defined slice on BigDataViewer.

bigdataviewer-core

ImgLib2-based viewer for registered SPIM stacks and more

bigdataviewer-projectors

Tests of various projectors for BigDataViewer

bigdataviewer-vistools

Helpers to use BigDataViewer as a quick visualization tool in other projects.

bigdataviewer_fiji

Fiji plugins for starting BigDataViewer and exporting data.

bigstitcher

ImgLib2/BDV implementation of Stitching for large datasets

bigwarp

A tool for manual pointwise deformable registration using bigdataviewer.

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

chemlabdatabase

This software is an online database to register chemicals products in a research lab. Very simple, user-friendly, and easy to maintain. Requires a server with Apache, Php and MySql. User identification can be made via LDAP or Shibboleth.

clij2-fft

controller42

Matlab code for the control, recording and synchronization of several devices (pumps, camera, live trackers, micromanipulators).

covid-19

COVID-19 Futures, Explained With Playable Simulations

cplxtomodarg

deepslice

A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.

distanceanalysis-diana

An ImageJ tool for object-based 3D co-localization and distance analysis.

f2p2

Free-Form 2-Photon Patterning

fluids3

fluids v.3

freelyjointedchain_js

Javascript simulation of a freely jointed chain polymer (with inertia)

ijcommand

Simple ImageJ2 commands

ijp-imagetoatlas

Atlas display and registration tools

ijp-imglib2bdvdemo-ij2

Various demos using imglib2 and bdv

ijp-operetta-importer

New & Improved PerkinElmer Operetta Importer Script using BioFormats!

ilastik4ij

ImageJ plugins to run ilastik workflows

imagej-mesh

Data structures and I/O for meshes

imagej-ui-swing

ImageJ UI for Java Swing.

imagej.github.io

GitHub Pages for ImageJ