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armadillo

A repo to track the armadillo c++ matrix library

bactopia

A flexible pipeline for complete analysis of bacterial genomes

bactopia-py

A Python package for working with Bactopia

bamtools

C++ API & command-line toolkit for working with BAM data

boost_filesystem

A repo to follow just the code needed for boost_filesystem

boost_math

Repo for only math sub-portion of c++ boost

c3

A D3-based reusable chart library

cmake

A repo to track the cmake build system library

cpp_shared_mutex

LLVM for Mac OS X shared mutex library code because as of right now apple clang does not have it compiled in their so called c++14 libc++

cppclustering

A c++ library for various clustering algorithms

cppsetuptools

Scripts and such for setting up cpp projects

docker-foswiki-2

Docker materials for building a foswiki 2.0 docker

docker-owncloud

A simple docker container for a standalone owncloud installation

elucidator

c++ code for various sequence analysis utilities

flash

A repo to track the flash paired end reads stitcher

graphsourcecode

Some scripts for graphing out c++ source code

grip

Preview GitHub Markdown files like Readme locally before committing them.

gtkmmexperiment

Testing out gtkmm

haplotyperainbows

R package for creating Rainbow Haplotype Displays

homebrew-core

🍻 Default formulae for the missing package manager for macOS

htmlexperiments

Code Experimenting With html, css, js, d3, c3

libpca

A repo to track the library lippca

locationbookmarking

Some convenience bash scripts to bookmark locations

mathgl

mongodbexp

Experimenting with mongodb c++ driver

monocle-release

muscle

A repo to track the multiple aligner muscle

njhcpp

C++ code contributed to by member of bioinformatics and integrative biology at Umass Med

njhrcode

Various R code from Nick Hathaway

njhrinside

A wrapper for RInside for cpp