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nhartwic's Projects

3d-dna icon 3d-dna

3D de novo assembly (3D DNA) pipeline

dr4ft icon dr4ft

Magic: the Gathering online draft simulator

example_repo icon example_repo

this repo exists to give an example of the github project pages

racon icon racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

salk-containerized icon salk-containerized

collection of containers designed/built by snakemake for packaging dependcies of repos

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

tibanna icon tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

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