Nils Homer's Projects
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!
C++ API & command-line toolkit for working with BAM data
Library for use in BaseSpace apps.
A collection of tools to work with Illumina's basespace
BaseSpace Python SDK
Best-practice pipelines for fully automated high throughput sequencing analysis
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
BFAST: the Blat-like Fast Accurate Search Tool
Bioinformatics Example Repository
Bioinformatics QC Reporting Tools
Conda recipes for the bioconda channel.
Utilities for building and managing bioconda recipes
Benchmarking programming languages/implementations for common tasks in Bioinformatics
Common idioms and their implementation across Bioinformatic workflow languages
Official git repository for Biopython (originally converted from CVS)
A conda-smithy repository for bullet-python.
Burrow-Wheeler Aligner
Python bindings to bwa mem
A simple consensus caller based on partial order alignment with spoa
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
Yet another JSON library for Scala