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100-days-of-ml-code

100 Days of ML Coding

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

best-of-ml-python

🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.

dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

efptt_thyroid_project

micropipe

A pipeline for high-quality bacterial genome construction using ONT sequencing

ml-from-scratch

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep learning.

on-premise-bioinformatics-infrastructure

This repo for setting up the local infrastructure for bioinformatics analysis

python

All Algorithms implemented in Python

pythonnumericaldemos

Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.

scrna-seq_notes

A list of scRNA-seq analysis tools

scrna-tools

Table of software for the analysis of single-cell RNA-seq data.

tangram

Spatial alignment of single cell transcriptomic data.

testpipeline

A small example pipeline used to test new nf-core infrastructure and common code.