Related Issues (20)
- Add link to docs in warning about missing GitHub authentication token
- `nf-core modules create` issue for external modules repositories HOT 9
- Add nf-schema comment to the plugin import and sample sheet channel generation HOT 1
- `nf-core sync` will modify the template incorrectly if the pipeline prefix is uppercase HOT 2
- Improve error message when modules directory is not empty
- Lean down CLI for remote component repositories HOT 4
- Add pipeline nf-test tests
- Add native support for multiple `org_path` in modules and subworkflows directories HOT 3
- nf-core modules install <tool> throws a stack trace when first installing a module to a non-nf-core pipeline HOT 3
- nf-core lint stack trace error list index out of range HOT 1
- can't create nf-core.yml file HOT 4
- nf-core lint should not complain when label is double quoted, or fix quotation
- meta information not matching between main.nf and meta.yml should result in failure
- Support NXF_SINGULARITY_LIBRARYDIR in `nf-core download` HOT 4
- Lint for correct `meta.yml` tuple structure in modules and subworkflows
- pytest HOT 1
- Fetch bio.tools identifiers for module YAML file
- CLI helper to select EDAM ontologies for module inputs / outputs
- `nf-core schema build` uses old schema in json file HOT 2
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