Related Issues (20)
- Multi-allelic indel sites don't get CADD scores for all alleles
- Error when 'other' is given as gender HOT 2
- ped file cannot be created when outdir is an s3 path HOT 1
- https://ai.marrvel.org / how to integrate to Scout and our analysis? HOT 5
- Bigtools
- destination filesystem does not support xattrs HOT 3
- Stub run (and regular run) crashes on PEDDY HOT 3
- Container for get_chrom_sizes doesn't work HOT 1
- Mismatch with new DNAScope ML model format HOT 3
- bash: singularity: command not found HOT 5
- publishDir mode missing in raredisease.config for processes FASTQC and CREATE_PEDIGREE_FILE HOT 1
- Test+Docker profile fails: "The TensorFlow library was compiled to use AVX instructions, but these aren't available on your machine." HOT 5
- Allow 'lane' in samplesheet.csv to be String type (as in e.g. sarek) HOT 4
- Test+Docker profile fails: "ValueError: `call_variants_outputs` did not pass sanity check." HOT 1
- `vep_plugin_files` listed as optional parameter but pipeline won't run without it HOT 1
- Add default support for haploid variant calls HOT 2
- filter_vep broken with hg38 HOT 1
- Option to publish GVCFs HOT 2
- ERROR ~ while scanning a simple key HOT 2
- Allow multiple unrelated cases/families in samplesheet.csv HOT 1
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