Comments (3)
When intermediate files are not saved, we have empty directories with just logs and no Bam / FastQ files. Then users think that the pipeline hasn't worked and create bug reports. With this we just create a small file explaining this which gets copied into the results directory.
https://github.com/nf-core/rnaseq/blob/master/assets/where_are_my_files.txt
https://github.com/nf-core/rnaseq/blob/44f1525d7adfa3a6afcafdcf7730eca78a1a2511/main.nf#L489-L490
from methylseq.
Not really sure I understand the point of that text file.
Can you elaborate a little more?
from methylseq.
Oh I see!
Good idea
from methylseq.
Related Issues (20)
- Add CX report support from bismark_methylation_extractor HOT 7
- Add `asTair`
- Support for NuGEN Ovation RRBS HOT 2
- samplesheet input is not detecting entire values in sample column HOT 6
- Create metro map HOT 1
- Add gemBS option
- CG CHG and CHH with --comprehensive flag using bismark workflow HOT 8
- --rrbs and --emseq parameter and argument usage
- typo in samplesheet in README.md?
- Latest template merge completely broke dev branch (on AWS + Fusion) HOT 4
- Specify additional "genomes" of spike-in controls for downstream calculation of bisulfite conversion efficiency HOT 1
- Schematic for the methylseq pipeline
- bwameth pipeline skipping all bwameth steps when --fasta, --fasta_index, and --bwa_meth_index are provided. HOT 2
- AS-XS tag missing
- Write tests for samplesheet sample merging/grouping
- Adding --maxVariantFrac and --minOppositeDepth to MethylDackel (Bwameth option)
- Bwameth vs bismark HOT 1
- Multiple issues in the pipeline HOT 1
- samplesheet handling: different path + same filename gives an error
- Pipeline requires 72GB of RAM, even to test. HOT 1
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from methylseq.