Comments (2)
Hi Guillaume,
I could not reproduce the error locally - it ran to completion with the following setup on a laptop:
- nextflow: version 22.04.4.5706
- OS: macOS Monterey 12.5.1 (21G83)
- docker: version 20.10.17, build 100c701
nextflow run -r dev nf-core/circrna -profile docker,test
I have never used this laptop to run the analysis so it seems everything packaged with the workflow is working (for me).
Please do not use master
, it is not stable. Try giving it another shot and let me know if the same error occurs.
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Thanks Barry,
The pipeline completed successfully on my other workstation so it narrows it down to a specific issue in my first machine.
from circrna.
Related Issues (20)
- Implement circRNA database annotation functionalities HOT 1
- Implement circbase HOT 1
- Implement circatlas HOT 1
- Implement circbank HOT 1
- Implement circRNADisease HOT 1
- Implement polyA-Benchmarking
- Decide how to proceed with the differential expression subworkflow
- Deprecate the `module` parameter
- Add `psirc quant` output to MulitQC via `kallisto` module
- Problems with empty annotation intersection HOT 12
- GTF entries on sequence which is not present in FASTA HOT 11
- GTF file not found with CIRIquant HOT 4
- SOLUTION: re-run with at least --limitSjdbInsertNsj HOT 11
- FATAL: the requested image was not found HOT 1
- ERROR ~ Invalid method invocation `call` with arguments using DCC HOT 1
- pandas.errors.EmptyDataError: No columns to parse from file
- Error executing process > 'NFCORE_CIRCRNA:CIRCRNA:MIRNA_PREDICTION:TARGETSCAN
- How can I accelerate the TARGETSCAN process when dealing with an excessive number of sequences that takes a long time? HOT 4
- Add circMiner circRNA detection
- When running on the sponging branch, there is an error in the annotation part. HOT 5
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