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Add IDR analysis about chipseq HOT 5 OPEN

nf-core avatar nf-core commented on May 31, 2024
Add IDR analysis

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Comments (5)

JoseEspinosa avatar JoseEspinosa commented on May 31, 2024

This one could be also relevant for the implementation of the IDR analysis specifically for ChIP-seq analysis, implemented in NF:
https://github.com/bioinfo-pf-curie/chip-seq

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drpatelh avatar drpatelh commented on May 31, 2024

We would need to think about how we define "replicates" here to use that right? Now that we have removed the replicate column from the samplesheet. Maybe we can have an optional column for replicates in the samplesheet for this kind of thing? 🤔

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JoseEspinosa avatar JoseEspinosa commented on May 31, 2024

Yes, that could be an option, another one could be to have a separate file with the information about replicates... In the case we want to keep the samplesheet standard across pipelines

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drpatelh avatar drpatelh commented on May 31, 2024

I did think about having a separate metadata file but why?! Keep it simple and have one would be my preference.

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JoseEspinosa avatar JoseEspinosa commented on May 31, 2024

Yes, I agree two metadata files means increasing at least 2x the possibility of making mistakes 😝

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