Comments (3)
Maybe it's worth following this up with the authors of deepTools
to make sure that there is an upper limit in terms of the number of samples. Would be better if an appropriate error message was generated before the rest of the script is executed.
It's not that informative having this many samples plotted for this kind of assessment. Ideally, we would plot all the IPs from the same experimental group along with their corresponding inputs.
from chipseq.
Looks like this has been fixed in deepTools pretty recently: deeptools/deepTools@be9eda6
If we update the pipeline to v3.2.0 of deepTools then the error should be resolved.
Phil
from chipseq.
Addressed in #71
from chipseq.
Related Issues (20)
- Header missing is in bowtie2 outputted bam files
- Problem with samplesheet HOT 3
- Process `NFCORE_CHIPSEQ:CHIPSEQ:ALIGN_BWA_MEM:BWA_MEM (EBAC_Input_REP2_T1)` terminated with an error exit status (1) HOT 3
- mergeBed ERROR: Requested column 10, but database file - only has fields 1 - 9. HOT 18
- Normalisation of bigwig files
- package or namespace load failed for ‘UpSetR’ HOT 3
- No Space left on device error HOT 3
- Make subworkflows & modules available for nf-core tools HOT 1
- Default values for p-value and FDR
- Get rid of checkIfExists for params paths
- minor "samplesheet_pe.csv" format issue
- PHANTOMPEAKQUALTOOLS throws stack overflow exception HOT 1
- MACS2: Too few paired peaks (0) so I can not build the model!
- Error with NextSeq trimming
- Error running the pipline test in the BWA index step
- jobs failing with sigbus and unknown userid errors HOT 1
- Update MACS to v3
- There are multiple files for each of the following file names
- Can't run if there is no control
- Improve website on parameters section Alignment Options for argument --save_unaligned
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from chipseq.