Comments (3)
d4straub
commented on June 15, 2024
1
Yes, I just checked: Unicycler assembly (used for hybrid assembly) includes indeed already polishing with Pilon. So no additional polishing step is needed.
I close that issue, open another one if you recognize other oddities!
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d4straub
commented on June 15, 2024
My notes say that assembly polishing is already done by Unicycler, that is used for hybrid assembly. Do you have there an opposing example/guideline/source? I am open to changing that, but need some sort of reference that this is beneficial.
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varunshamanna
commented on June 15, 2024
I am kind of new to nanopore analysis. I think from your code it means that assembly polishing is not required when doing the hybrid assembly. Is that right? Correct me if I am wrong. If it is so please close the issue.
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