Comments (5)
Nope, it should be very quickly.
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So far, this interface has remained. May I ask which part is the problem?
from nextpolish.
What is your system and gcc version?
from nextpolish.
1:Linux version 3.10.0-327.el7.x86_64 ([email protected]) (gcc version 4.8.3 20140911 (Red Hat 4.8.3-9) (GCC) ) #1 SMP Thu Nov 19 22:10:57 UTC 2015
2:gcc version 4.8.5 20150623 (Red Hat 4.8.5-36) (GCC)
Is it possibly related to my version of gcc?
from nextpolish.
Could you try to remove the option -Wall -O3 -fvisibility=hidden -s
in util/Makefile
, and make again?
from nextpolish.
Related Issues (20)
- Empty bin directory after installation? HOT 2
- User defined alignment pipeline for short- and long-reads HOT 2
- [question] combine with medaka or not? HOT 3
- run nextplolish2.py sleep HOT 8
- Ignore the secondary alignment HOT 2
- Test run failed at map_genome: "[gzclose] buffer error" HOT 3
- Installation failure with multiple definition of 'rle_auxtab' HOT 3
- db_split failed: HOT 4
- How does NextPolish polish an assembly with long reads? HOT 1
- make[2]: *** [Makefile:30: bwa] Error 1 错误 HOT 1
- slurmstepd: error: JOB CANCELLED DUE TO TIME LIMIT HOT 1
- run fails with long read only in conda env HOT 5
- SLURM out of memory and time... HOT 1
- [main_samview] fail to read the header from "-" HOT 1
- zlib.h not found error HOT 1
- polish_genome failed HOT 1
- problem with NextPolish-CentOS6.9.tgz
- The process of polishing causes a significant decrease in genome size. HOT 8
- During the execution of samtools index, I encountered an error: "invalid option -- '@'" HOT 4
- An error message was encountered while running 00.lgs_polish/04.polish.ref.sh.work/polish_genome01
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