Comments (3)
amptk now requires edlib v1.2.1 -> there was a bug in previous versions of the library. edlib locally has been removed from repository
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Oh, that file probably shouldn't be there.... I think the ELF is an error complaining about the .so file in the lib directory that was built for another platform. Try to remove that file, i.e. rm /home/mik/amptk/lib/edlib.so
. I was trying to have edlib build during install locally, but haven't gotten it to work smoothly yet, and best way to install right now is via pip as you did.
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Thanks for the reply! Removal of amptk/lib/edlib.so
helped and amptk
is working now.
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Related Issues (20)
- Issue installing AMPtk (Mac OS - M1 chip) HOT 2
- amptk database error HOT 2
- Custom 16S database not found after successful installation HOT 11
- COI Database build strips specific epithet from species column HOT 1
- related with SynMock HOT 2
- Support Python 3.8 onwards HOT 3
- SyntaxError in "duplicate ID in mapping file: XXX, exiting"
- Default for -p, --index_bleed documented as 0.005 HOT 1
- Typo "Bjerkandara adusta" --> "Bjerkandera adusta" HOT 1
- Missing species names in amptk_mock1.fa HOT 3
- Missing final new line in amptk_mock1.fa and amptk_synmock.fa HOT 2
- Inconsistent primer trimming sequence in amptk_mock*.fa HOT 5
- Matching MockA, MockB1 and MockB2 to FASTQ filenames HOT 2
- platform.linux_distribution is removed since Python 3.8 HOT 1
- Species names in amptk_mock2.fa and amptk_mock3.fa vs Figure 4
- new users cannot install amptk properly, please help HOT 3
- unoise3 clustering HOT 5
- Problem with TypeError during AMPtk cluster HOT 11
- Saw you started some prelim ONT methods HOT 2
- Problematic unoise3 implementation with VSEARCH HOT 13
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