Comments (4)
Can you post a snippet of what the OTU table looks like, including the taxonomy field? Never seen this before. It seems like a matplotlib error, but likely due to the input data not being what it is expecting. What version of UFITS are you using? Was OTU table created with same version?
from amptk.
Usage: ufits summarize
version: 0.7.4
Entire process done with this version.
#OTU ID I1 I2 I9 I17 I22 I25 I33 I39 II1 II4 II9 II12 II17 II25 II33 II39 III1 III5 III9 III17 III21 III25 III33 III38 IV1 IV6 IV9 IV12 V1 V4 V8 V12 VI1 VI5 VI9 VI12 Taxonomy
M00223:13:000000000-AM23G:1:1101:7202:21158_pident=97.6_OTU466 0 1 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 0 1 0 0 1 0 0 0 0 1 1 1 1 0 0 1 1 1 1 AB828007;k:Fungi,p:Ascomycota,c:Dothideomycetes,o:Hysteriales,f:Gloniaceae,g:Cenococcum
M00223:13:000000000-AM23G:1:1101:8113:4198_pident=99.1_OTU2125 1 0 0 1 1 1 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1
from amptk.
from amptk.
This can be closed.
from amptk.
Related Issues (20)
- Could not find the mydata.demux.fq.gz file after pre-processing HOT 1
- amptk database error HOT 2
- Custom 16S database not found after successful installation HOT 11
- COI Database build strips specific epithet from species column HOT 1
- related with SynMock HOT 2
- Support Python 3.8 onwards HOT 3
- SyntaxError in "duplicate ID in mapping file: XXX, exiting"
- Default for -p, --index_bleed documented as 0.005 HOT 1
- Typo "Bjerkandara adusta" --> "Bjerkandera adusta" HOT 1
- Missing species names in amptk_mock1.fa HOT 3
- Missing final new line in amptk_mock1.fa and amptk_synmock.fa HOT 2
- Inconsistent primer trimming sequence in amptk_mock*.fa HOT 5
- Matching MockA, MockB1 and MockB2 to FASTQ filenames HOT 2
- platform.linux_distribution is removed since Python 3.8 HOT 1
- Species names in amptk_mock2.fa and amptk_mock3.fa vs Figure 4
- new users cannot install amptk properly, please help HOT 3
- unoise3 clustering HOT 5
- Problem with TypeError during AMPtk cluster HOT 11
- Saw you started some prelim ONT methods HOT 2
- Problematic unoise3 implementation with VSEARCH HOT 13
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
π Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. πππ
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google β€οΈ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from amptk.