Comments (7)
What was the command that you issued here?
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ufits filter -i out.otu_table.txt -f out.cluster.otus.fa -b MADMOCK
Mock community files: MADMOCK_S144_L001_R1_001.fastq; MADMOCK_S144_L001_R2_001.fastq
from amptk.
You need to specify a multi fasta file using the --mc flag if you are not using the default mock community
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Is this a mock community that we sent you?
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It is not. Can you send it to me?
from amptk.
Referring to the error - I think the most recent release (v0.6.0) should have this fixed.
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--mc
is now required for filtering. https://github.com/nextgenusfs/ufits/releases/tag/0.7.0
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