Comments (14)
Can you @pramodk jump in also and make comments?
from ringtest.
Associates the source voltage variable with an integer. This integer has nothing to do with and does not conflict with the discrete event gid used by the Parallel Network methods.
So you don't need to be concerned with overlapping gid and sgid. However, gap junctions are generally simulated with a pair of reciprocal voltage locations and POINT_PROCESSes on opposite sides of the gap, and thus there are often twice as many sgid as there are gap junctions. (not always the case. eg. for single compartment heart cells with many adjacent heart cells, only a single sgid is needed for each cell, and each cell has as many Gap point processes as there are adjacent cells.)
from ringtest.
Thank you, @nrnhines! In the simple ring network case, mk_halfgap
should be called only once in mk_gap
in ring.py.
from ringtest.
There are several examples, tests, that have the word "ring" in them. If you are referring to the ringtest repository, then
mk_gap
in the right circumstances (soma and dend both exist on the same rank) properly calls mk_halfgap
twice.
from ringtest.
Is this applicable to pass source Calcium concentration as well? Could this be used with gid_connect()
?
from ringtest.
@nrnhines I will file this question in nrn GitHub Issue Tracker.
from ringtest.
The intention is to support transfer of Calcium concentration using the same methods as for voltage transfer. I.e.
pc.source_var(section(x)._ref_cai, sgid)
I'll check this out and make sure it is working.
from ringtest.
@nrnhines here sgid
means a split global ID, or source global ID?
from ringtest.
It means source global identifier. An sgid value is unique in source_var and can be sent to any number of target_var. It is a completely different integer space than the set_gid2node space. i.e a sgid=1 is in no way necessarily associated with gid=1
from ringtest.
@nrnhines so, are you saying source global identifiers need to be prepared uniquely for membrane potential, and ion variants a user wants to transfer to the target respectively?
from ringtest.
I must admit that I never separately managed them in my Python analysis script.
from ringtest.
Yes. In other words a 1-1 correspondence between source variable references and sgid.
from ringtest.
@ikitayama : If there are no outstanding questions, this can be closed?
from ringtest.
Yes, please go ahead.
from ringtest.
Related Issues (3)
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from ringtest.