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I am the endowed chair for brain imaging at the University of South Carolina in the Department of Psychology. I lead the Neuroimaging Core and am the Co-Project Lead for Center for the brain health project of the Center for the Study of Aphasia Recovery. I lead the development of the NiiVue neuroimaging visualization project.

I helped create and lead development of several popular GitHub repositories:

  • dcm2niix converts complicated and manufacturer-specific medical imaging data into the simpler NIfTI format popular in neuroimaging sciences. This converter extracts BIDS sequence details that allow reproducible science and curated data. The permissive license and minimal dependencies have led it to be included with many popular tools in the field.
  • MRIcron is a light-weight and popular cross-platform visualization tool for neuroimaging.
  • MRIcroGL uses the capabilities of modern graphics cards to generate compelling volume rendering visualizations of voxel-based images.
  • Surfice uses the capabilities of modern graphics cards to generate compelling surface rendering visualizations of mesh-based data.
  • nii2mesh converts voxel-based images to surface meshes and is can be used from a web page without requiring any software to be installed.
  • NiiVue is a modular visualization tool for neuroimaging meshes and volumes. It can be inserted into web-pages supporting cloud interface, edge computing and stanalone applications. I am co-originator and co-lead development with @hanayik.

Chris's GitHub stats

Chris Rorden's Projects

afni icon afni

Official AFNI source and documentation

biquad-filter icon biquad-filter

Filter to attenuate chosen frequencies, visual Fast Fourier Transform (FFT) shows roll-off

bisweb icon bisweb

This is the repository for the BioImage Suite Web Project

bitmap_contrast icon bitmap_contrast

Matlab script for tuning the contrast and brightness of bitmap images

blindside icon blindside

A tool for controlling double-blinded studies

blog icon blog

Lab notes https://neurolabusc.github.io/blog/.

brainager icon brainager

Software for generating a brain-predicted age value, using Gaussian Processes regression, implemented in R

brainchop4 icon brainchop4

Brainchop: In-browser 3D MRI rendering and segmentation

bru2nii icon bru2nii

Bruker ParaVision to NIfTI conversion

c-ray icon c-ray

A classic parallel threading benchmark

cancel icon cancel

Simple continuous measures for assessing spatial neglect

clinical icon clinical

Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)

computeshaderwebgl icon computeshaderwebgl

WebGL2 Texture3D compute shaders with live view https://neurolabusc.github.io/ComputeShaderWebGL/

coreg_qa icon coreg_qa

Methods for generating quality assurance images for 3D coregistration of brain images

crnl icon crnl

Chris Rorden's Neuropsychology Lab Web Pages https://crnl.readthedocs.io/

ctp icon ctp

Matlab scripts for CTP perfusion

dcm2niix icon dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

dcm2niixl icon dcm2niixl

Accelerated dcm2niix DICOM to NIfTI for extra large datasets

dcm_qa icon dcm_qa

DICOM to NIfTI/BIDS validation script

dcm_qa_agfa icon dcm_qa_agfa

AGFA Impax PACS re-assignment of DICOM Private Elements

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