neufeld Goto Github PK
Name: Dr. Josh Neufeld's Lab
Type: Organization
Location: Waterloo, Ontario
Blog: https://uwaterloo.ca/biology/people-profiles/josh-d-neufeld
Dr. Josh Neufeld's Lab's Projects
aoa-genomics
Calvin Cornell scripts for assessing genome-encoded metabolic potential of ammonia-oxidizing archaea
axiome
AXIOME - Automation, Extension, and Integration Of Microbial Ecology: Helper tools to make managing numerical ecology pipelines easier
axiome2
Automation, eXtension, and Integration of Microbial Ecology
axiome3
Automated QIIME 2 Workflow wrapped in Luigi Framework currently in early development
axiome3-gui
AXIOME3 Full Stack Project
axiometic
A GUI companion for AXIOME
lab-server-training
Server training for the Neufeld lab
mesas
Microbial Ecology Scripts and Stuff
neufeld.github.com
Pages repository for Neufeld lab
pandaseq
PAired-eND Assembler for DNA sequences
pandaseq-sam
PAired-eND Assembler for DNA sequences – SAM/BAM format support
ssunique
SSUnique is a software tool designed to process unclassified and/ or rare fractions of SSU rRNA gene sequence libraries. Specifically, SSUnique generates a network- based visualization of taxonomic assignments then extracts unclassified and/or rare sequence groups, filtering these groups for phylogenetic novelty.
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