Name: sankar basu
Type: User
Company: Asutosh College affiliated to University of Calcutta, Kolkata, India
Bio: I am a computational biologist exploring biological puzzles at different scales, currently interested in protein design, drug design & molecular evolution.
Twitter: sankar8130
Location: Kolkata, India
Blog: https://www.scinetmol.in
sankar basu's Projects
Chromatic Number of a graph: The minimal number of non-degenerate set of colors by which all nodes of a 'undirected' graph is colorable, such that no two adjascent nodes share the same color.
clustering perl code
The Complementarity Plot for protein - protein docking
The Python programming language
Complementarity Scores for Fold Recognition
A database of monomeric globular proteins which has been extensively used in several studies to probe protein internal architecture, fold recognition and structure validation.
A database of protein-protein complexes consisting of 1879 co-crystallized interacting native structures (each containing two chains) with resolution better than 2 Å, and no missing backbone atoms.
DockQ: A quality measure for PPI complexes based on "CAPRI evaluation protocol"
Software for Analyzing Magnetic Images by a Fusion Imaging Approach to Study Nanoscale Surface Distribution of Magnetic Force
Local Melting in polymeric DNA: Melting Thermodynamics of a Contiguous polymeric ds-DNA in solution (with absolute base pairing complimentarity) spliting it into sizes of preferred window & overlap by the user
ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support Vector Regression algorithm. The current version has 13 features: both all-atom and interface features. ProQDock should also serve to develop hybrid methods in future attempts to solve this 'hard' problem.
Proteus is a Random Forrest based classifier to predict the 'disorder-to-order' transitioning binding residues (called 'protean') given the sequence of an Intrinsicall Disordered Protein (IDP)
Molecular Dynamics of Persistent Salt-bridges in Intrinsically Disorderd Proteins
Complementarity Plot : A structure validation tool for globular proteins
The Complementarity Plot for Protein-Protein Interface (CPint)